noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.3.1.4.4) Plots of Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.3.1.4.4.2) Iterating over all combinations of grouping variables
(1.3.1.4.4.2.1) Entire pool of samples
(1.3.1.4.4.2.2) Iterating over Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order
(1.3.1.4.4.2.2.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking
(1.3.1.4.4.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.3.1.4.4.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.3.1.4.4.2.2.2.1.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.4.4.2.2.2.1.1.0) Table 134. Data table used for plots. Data for all pooled samples. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.4.4.2.2.2.1.1.0-323666f1a66.1.3.1.4.4.2.2.2.1.1.csv

.record.id feature abundance.diff
MG1 Bacteroides.Otu0001 2.725e-03
MG10 Bacteroides.Otu0001 4.966e-01
MG13 Bacteroides.Otu0001 1.506e-01
MG14 Bacteroides.Otu0001 -6.092e-03
MG16 Bacteroides.Otu0001 1.024e-02
MG17 Bacteroides.Otu0001 4.258e-02
MG19 Bacteroides.Otu0001 4.416e-02
MG2 Bacteroides.Otu0001 -2.902e-03
MG21 Bacteroides.Otu0001 6.177e-02
MG22 Bacteroides.Otu0001 -1.049e-01
MG23 Bacteroides.Otu0001 9.506e-03
MG25 Bacteroides.Otu0001 1.649e-01
MG3 Bacteroides.Otu0001 2.066e-01
MG4 Bacteroides.Otu0001 1.209e-01
MG6 Bacteroides.Otu0001 -3.992e-02
MG8 Bacteroides.Otu0001 -4.020e-02
MG1 Bacteroides.Otu2520 1.618e-01
MG10 Bacteroides.Otu2520 -1.173e-01
MG13 Bacteroides.Otu2520 8.620e-03
MG14 Bacteroides.Otu2520 -7.465e-02
MG16 Bacteroides.Otu2520 -2.704e-02
MG17 Bacteroides.Otu2520 -5.743e-03
MG19 Bacteroides.Otu2520 -2.394e-01
MG2 Bacteroides.Otu2520 -3.766e-03
MG21 Bacteroides.Otu2520 -1.659e-02
MG22 Bacteroides.Otu2520 7.604e-02
MG23 Bacteroides.Otu2520 0.000e+00
MG25 Bacteroides.Otu2520 4.436e-02
MG3 Bacteroides.Otu2520 1.389e-01
MG4 Bacteroides.Otu2520 -1.767e-02
MG6 Bacteroides.Otu2520 -1.191e-02
MG8 Bacteroides.Otu2520 7.802e-02
MG1 Prevotella.Otu1987 -1.357e-01
MG10 Prevotella.Otu1987 0.000e+00
MG13 Prevotella.Otu1987 -2.194e-01
MG14 Prevotella.Otu1987 0.000e+00
MG16 Prevotella.Otu1987 0.000e+00
MG17 Prevotella.Otu1987 -1.989e-01
MG19 Prevotella.Otu1987 0.000e+00
MG2 Prevotella.Otu1987 -7.571e-02
MG21 Prevotella.Otu1987 9.962e-02
MG22 Prevotella.Otu1987 0.000e+00
MG23 Prevotella.Otu1987 0.000e+00
MG25 Prevotella.Otu1987 -2.478e-01
MG3 Prevotella.Otu1987 0.000e+00
MG4 Prevotella.Otu1987 0.000e+00
MG6 Prevotella.Otu1987 0.000e+00
MG8 Prevotella.Otu1987 -7.326e-05
MG1 Bacteroides.Otu2654 4.009e-01
MG10 Bacteroides.Otu2654 7.560e-02
MG13 Bacteroides.Otu2654 3.429e-02
MG14 Bacteroides.Otu2654 1.614e-03
MG16 Bacteroides.Otu2654 -4.714e-03
MG17 Bacteroides.Otu2654 -8.516e-05
MG19 Bacteroides.Otu2654 -1.612e-03
MG2 Bacteroides.Otu2654 -8.290e-04
MG21 Bacteroides.Otu2654 -7.487e-03
MG22 Bacteroides.Otu2654 -7.327e-03
MG23 Bacteroides.Otu2654 7.416e-04
MG25 Bacteroides.Otu2654 4.818e-03
MG3 Bacteroides.Otu2654 3.370e-02
MG4 Bacteroides.Otu2654 6.595e-02
MG6 Bacteroides.Otu2654 -2.131e-04
MG8 Bacteroides.Otu2654 4.885e-02
MG1 Bacteroides.Otu0863 2.447e-03
MG10 Bacteroides.Otu0863 2.601e-02
MG13 Bacteroides.Otu0863 2.756e-02
MG14 Bacteroides.Otu0863 1.316e-01
MG16 Bacteroides.Otu0863 7.900e-02
MG17 Bacteroides.Otu0863 -8.260e-03
MG19 Bacteroides.Otu0863 -9.401e-03
MG2 Bacteroides.Otu0863 1.008e-02
MG21 Bacteroides.Otu0863 -1.090e-02
MG22 Bacteroides.Otu0863 9.431e-03
MG23 Bacteroides.Otu0863 1.594e-02
MG25 Bacteroides.Otu0863 2.240e-02
MG3 Bacteroides.Otu0863 -6.552e-03
MG4 Bacteroides.Otu0863 -6.196e-03
MG6 Bacteroides.Otu0863 1.577e-01
MG8 Bacteroides.Otu0863 -3.393e-03
MG1 Bacteroides.Otu2038 3.818e-04
MG10 Bacteroides.Otu2038 1.606e-03
MG13 Bacteroides.Otu2038 1.551e-02
MG14 Bacteroides.Otu2038 1.254e-01
MG16 Bacteroides.Otu2038 -2.114e-03
MG17 Bacteroides.Otu2038 5.059e-03
MG19 Bacteroides.Otu2038 1.988e-03
MG2 Bacteroides.Otu2038 3.786e-04
MG21 Bacteroides.Otu2038 1.986e-02
MG22 Bacteroides.Otu2038 -7.567e-03
MG23 Bacteroides.Otu2038 1.443e-01
MG25 Bacteroides.Otu2038 1.708e-02
MG3 Bacteroides.Otu2038 1.866e-02
MG4 Bacteroides.Otu2038 2.352e-03
MG6 Bacteroides.Otu2038 -1.685e-03
MG8 Bacteroides.Otu2038 -2.280e-02
MG1 Faecalibacterium.Otu0067 -6.537e-02
MG10 Faecalibacterium.Otu0067 4.198e-03
MG13 Faecalibacterium.Otu0067 -1.560e-03
MG14 Faecalibacterium.Otu0067 -1.430e-02
MG16 Faecalibacterium.Otu0067 -2.018e-02
MG17 Faecalibacterium.Otu0067 4.790e-02
MG19 Faecalibacterium.Otu0067 5.674e-03
MG2 Faecalibacterium.Otu0067 -3.070e-02
MG21 Faecalibacterium.Otu0067 2.118e-02
MG22 Faecalibacterium.Otu0067 -5.212e-03
MG23 Faecalibacterium.Otu0067 2.208e-02
MG25 Faecalibacterium.Otu0067 1.247e-02
MG3 Faecalibacterium.Otu0067 -1.614e-02
MG4 Faecalibacterium.Otu0067 -1.599e-03
MG6 Faecalibacterium.Otu0067 -1.466e-02
MG8 Faecalibacterium.Otu0067 -2.062e-02
MG1 Alistipes.Otu2508 -9.160e-03
MG10 Alistipes.Otu2508 -4.431e-02
MG13 Alistipes.Otu2508 3.821e-02
MG14 Alistipes.Otu2508 -2.701e-02
MG16 Alistipes.Otu2508 1.010e-03
MG17 Alistipes.Otu2508 -6.131e-03
MG19 Alistipes.Otu2508 4.513e-04
MG2 Alistipes.Otu2508 -2.342e-02
MG21 Alistipes.Otu2508 -9.856e-02
MG22 Alistipes.Otu2508 -5.612e-03
MG23 Alistipes.Otu2508 0.000e+00
MG25 Alistipes.Otu2508 6.635e-03
MG3 Alistipes.Otu2508 3.089e-02
MG4 Alistipes.Otu2508 0.000e+00
MG6 Alistipes.Otu2508 1.231e-01
MG8 Alistipes.Otu2508 0.000e+00
MG1 Ruminococcus.Otu1859 -1.761e-04
MG10 Ruminococcus.Otu1859 0.000e+00
MG13 Ruminococcus.Otu1859 -1.410e-03
MG14 Ruminococcus.Otu1859 -1.369e-01
MG16 Ruminococcus.Otu1859 -1.641e-02
MG17 Ruminococcus.Otu1859 0.000e+00
MG19 Ruminococcus.Otu1859 -1.817e-01
MG2 Ruminococcus.Otu1859 -5.924e-02
MG21 Ruminococcus.Otu1859 -1.606e-02
MG22 Ruminococcus.Otu1859 -3.570e-03
MG23 Ruminococcus.Otu1859 0.000e+00
MG25 Ruminococcus.Otu1859 -2.714e-03
MG3 Ruminococcus.Otu1859 -9.188e-03
MG4 Ruminococcus.Otu1859 0.000e+00
MG6 Ruminococcus.Otu1859 -6.607e-03
MG8 Ruminococcus.Otu1859 -1.606e-02
MG1 Bacteroides.Otu2065 -3.875e-03
MG10 Bacteroides.Otu2065 -3.432e-02
MG13 Bacteroides.Otu2065 0.000e+00
MG14 Bacteroides.Otu2065 0.000e+00
MG16 Bacteroides.Otu2065 -3.991e-02
MG17 Bacteroides.Otu2065 0.000e+00
MG19 Bacteroides.Otu2065 3.769e-01
MG2 Bacteroides.Otu2065 0.000e+00
MG21 Bacteroides.Otu2065 -2.553e-02
MG22 Bacteroides.Otu2065 0.000e+00
MG23 Bacteroides.Otu2065 0.000e+00
MG25 Bacteroides.Otu2065 0.000e+00
MG3 Bacteroides.Otu2065 -1.316e-05
MG4 Bacteroides.Otu2065 0.000e+00
MG6 Bacteroides.Otu2065 0.000e+00
MG8 Bacteroides.Otu2065 7.167e-02
MG1 Bacteroides.Otu0848 8.741e-03
MG10 Bacteroides.Otu0848 4.465e-02
MG13 Bacteroides.Otu0848 5.281e-03
MG14 Bacteroides.Otu0848 4.685e-03
MG16 Bacteroides.Otu0848 -1.186e-02
MG17 Bacteroides.Otu0848 -1.277e-03
MG19 Bacteroides.Otu0848 -1.343e-03
MG2 Bacteroides.Otu0848 1.714e-04
MG21 Bacteroides.Otu0848 -1.575e-02
MG22 Bacteroides.Otu0848 3.979e-03
MG23 Bacteroides.Otu0848 1.290e-01
MG25 Bacteroides.Otu0848 1.673e-02
MG3 Bacteroides.Otu0848 9.533e-03
MG4 Bacteroides.Otu0848 -4.068e-03
MG6 Bacteroides.Otu0848 4.240e-03
MG8 Bacteroides.Otu0848 2.679e-02
MG1 Prevotella.Otu1994 0.000e+00
MG10 Prevotella.Otu1994 0.000e+00
MG13 Prevotella.Otu1994 -1.383e-01
MG14 Prevotella.Otu1994 0.000e+00
MG16 Prevotella.Otu1994 0.000e+00
MG17 Prevotella.Otu1994 -3.210e-02
MG19 Prevotella.Otu1994 0.000e+00
MG2 Prevotella.Otu1994 -2.169e-01
MG21 Prevotella.Otu1994 1.301e-02
MG22 Prevotella.Otu1994 0.000e+00
MG23 Prevotella.Otu1994 0.000e+00
MG25 Prevotella.Otu1994 -2.240e-02
MG3 Prevotella.Otu1994 0.000e+00
MG4 Prevotella.Otu1994 0.000e+00
MG6 Prevotella.Otu1994 0.000e+00
MG8 Prevotella.Otu1994 0.000e+00
MG1 Bacteroides.Otu2431 4.277e-03
MG10 Bacteroides.Otu2431 -4.749e-02
MG13 Bacteroides.Otu2431 4.128e-03
MG14 Bacteroides.Otu2431 -6.144e-05
MG16 Bacteroides.Otu2431 -7.173e-05
MG17 Bacteroides.Otu2431 -1.363e-03
MG19 Bacteroides.Otu2431 1.881e-02
MG2 Bacteroides.Otu2431 -8.290e-04

(1.3.1.4.4.2.2.2.1.1.1) Widget 148. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.4.4.2.2.2.1.1.1-3231a6434a2Dynamic.Pivot.Table.html

(1.3.1.4.4.2.2.2.1.1.1) Widget 149. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.4.4.2.2.2.1.1.1-32328c8230aDynamic.Pivot.Table.html

(1.3.1.4.4.2.2.2.1.1.1) Table 135. Summary table. Data for all pooled samples. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.4.4.2.2.2.1.1.1-323739395a9.1.3.1.4.4.2.2.2.1.1.csv

feature mean sd median incidence
Lachnospiracea_incertae_sedis.Otu0113 -2.982e-03 0.002215 -3.279e-03 0.0625
Lachnospiraceae.Otu2512 -7.421e-03 0.007149 -6.050e-03 0.1250
Lachnospiraceae.Otu2222 -5.409e-03 0.009516 -2.615e-03 0.0000
Lachnospiracea_incertae_sedis.Otu2549 -3.181e-03 0.007575 -1.263e-03 0.0000
Lachnospiracea_incertae_sedis.Otu1990 -3.022e-03 0.003390 -3.549e-03 0.1250
Ruminococcus.Otu1027 -1.840e-03 0.001954 -1.365e-03 0.0000
Lachnospiraceae.Otu0272 -2.839e-03 0.006310 -5.561e-04 0.0625
Lachnospiracea_incertae_sedis.Otu2746 -2.815e-03 0.004218 -1.719e-03 0.1250
Gemmiger.Otu0907 -3.846e-03 0.004231 -2.968e-03 0.1250
Ruminococcus.Otu2545 -1.872e-03 0.003816 -4.426e-04 0.0000
Lachnospiraceae.Otu0220 -4.299e-03 0.011167 -3.039e-03 0.1875
Blautia.Otu2495 -2.082e-03 0.004219 -9.771e-04 0.1875
Bacteroides.Otu2375 2.126e-03 0.002927 1.291e-03 0.7500
Ruminococcus.Otu1859 -2.813e-02 0.053874 -5.089e-03 0.0000
Roseburia.Otu2637 -1.309e-03 0.002100 -7.415e-04 0.3125
Lachnospiraceae.Otu2612 -1.947e-03 0.003390 -1.629e-03 0.2500
Bacteroides.Otu1201 6.797e-03 0.012386 3.158e-03 0.7500
Bacteroides.Otu0001 6.979e-02 0.140929 2.641e-02 0.6875
Ruminococcus.Otu1915 -2.128e-03 0.003995 -6.977e-04 0.0000
Blautia.Otu2475 -1.339e-03 0.007172 -2.777e-03 0.1250
Bacteroides.Otu0863 2.734e-02 0.051129 9.755e-03 0.6250
Lachnospiracea_incertae_sedis.Otu1152 -2.147e-03 0.007040 -1.171e-03 0.3125
Bacteroides.Otu2038 1.991e-02 0.046280 2.170e-03 0.7500
Lachnospiraceae.Otu0578 -2.497e-03 0.004382 -1.047e-03 0.0000
Blautia.Otu0591 -9.122e-05 0.001769 -3.046e-04 0.1875
Bacteroides.Otu0006 5.313e-03 0.010811 3.531e-03 0.7500
Lachnospiraceae.Otu0898 1.073e-03 0.002814 4.376e-04 0.7500
Bacteroides.Otu0848 1.372e-02 0.033952 4.462e-03 0.6875
Coprococcus.Otu0802 -3.373e-03 0.007073 -2.051e-04 0.1875
Roseburia.Otu1051 -1.964e-04 0.005661 -6.092e-04 0.2500
Bacteroides.Otu0069 9.372e-03 0.019580 2.144e-03 0.6875
Bacteroides.Otu2460 2.117e-03 0.004812 5.390e-04 0.6875
Bacteroides.Otu2654 4.026e-02 0.099905 1.178e-03 0.5625
Bacteroides.Otu2765 8.503e-03 0.018065 2.101e-03 0.5625
Bacteroides.Otu2104 3.683e-03 0.009601 9.699e-04 0.6250
Oscillibacter.Otu1518 -2.503e-03 0.004551 -3.124e-04 0.0625
Erysipelotrichaceae_incertae_sedis.Otu0818 2.625e-02 0.093637 4.826e-04 0.5625
Lachnospiracea_incertae_sedis.Otu0651 -1.943e-03 0.005638 -2.590e-04 0.1875
Faecalibacterium.Otu0751 -1.193e-03 0.009206 -4.404e-04 0.3750
Ruminococcus.Otu1429 -1.974e-03 0.004364 -5.839e-04 0.1250
Dorea.Otu1142 -1.477e-03 0.007256 -1.873e-03 0.3125
Faecalibacterium.Otu0067 -4.803e-03 0.025596 -3.405e-03 0.3750
Clostridium_IV.Otu1864 -2.991e-03 0.008776 -2.977e-04 0.1875
Bacteroides.Otu2437 -8.077e-03 0.026857 -1.158e-04 0.3125
Bacteroides.Otu0877 2.581e-03 0.011822 1.026e-03 0.5625
Parabacteroides.Otu1378 3.515e-03 0.009587 -8.807e-05 0.4375
Ruminococcaceae.Otu2507 -2.441e-03 0.008124 -1.085e-04 0.1875
Clostridium_XI.Otu2681 6.005e-03 0.025570 -1.681e-04 0.2500
Clostridium_XI.Otu1804 5.522e-03 0.031766 -2.810e-03 0.3125
Bacteroides.Otu1669 -3.785e-04 0.002184 -2.686e-04 0.3125
Bacteroides.Otu1411 -7.087e-04 0.002613 -1.385e-04 0.3125
Bacteroides.Otu0929 5.781e-03 0.018552 3.557e-04 0.5000
Bacteroides.Otu2431 -5.534e-03 0.021867 -6.659e-05 0.4375
Parabacteroides.Otu1736 -1.332e-03 0.005034 -1.137e-04 0.3750
Clostridiales.Otu1597 -6.085e-03 0.014105 0.000e+00 0.0000
Bacteroides.Otu2120 1.146e-03 0.003108 5.505e-05 0.5000
Lachnospiraceae.Otu2599 1.951e-03 0.005614 -2.308e-04 0.3750
Bacteroides.Otu2520 -3.958e-04 0.095773 -4.755e-03 0.3750
Bacteroides.Otu0752 1.809e-04 0.002042 4.024e-04 0.6250
Clostridium_XlVa.Otu0236 -2.772e-03 0.012904 -1.504e-04 0.5000
Lachnospiracea_incertae_sedis.Otu0778 -1.866e-04 0.004675 -1.132e-03 0.2500
Lachnospiraceae.Otu0875 4.807e-04 0.004743 -1.135e-03 0.4375
Lachnospiraceae.Otu1734 1.034e-03 0.005247 -4.593e-04 0.3125
Roseburia.Otu2084 -2.550e-04 0.002529 8.602e-05 0.5000
Lachnospiraceae.Otu0790 -4.769e-04 0.004523 -4.283e-04 0.3750
Bacteroides.Otu2625 1.634e-02 0.055933 -2.686e-04 0.4375
Bacteroides.Otu2343 1.608e-03 0.004481 0.000e+00 0.4375
Prevotella.Otu1803 -5.602e-03 0.014359 0.000e+00 0.1250
Prevotella.Otu1987 -4.863e-02 0.098445 0.000e+00 0.0625
Blautia.Otu0620 -6.951e-05 0.002426 -7.607e-05 0.3750
Bacteroides.Otu2383 4.832e-04 0.002131 0.000e+00 0.4375
Alistipes.Otu2508 -8.660e-04 0.045254 0.000e+00 0.3750
Prevotella.Otu0634 -2.226e-03 0.011442 -2.871e-05 0.1875
Escherichia_Shigella.Otu2393 7.707e-03 0.032105 -1.583e-04 0.1875
Bacteroides.Otu0661 2.553e-03 0.014179 -1.249e-03 0.3750
Prevotella.Otu2602 -7.136e-03 0.018888 0.000e+00 0.0625
Enterococcus.Otu1019 4.805e-03 0.017866 0.000e+00 0.3750
Bacteroides.Otu1565 -5.580e-03 0.026467 -3.663e-05 0.2500
Bacteroides.Otu0775 -3.219e-04 0.002415 0.000e+00 0.3750
Alistipes.Otu1466 -6.131e-03 0.045926 0.000e+00 0.3750
Bacteroides.Otu2481 -1.690e-02 0.067389 0.000e+00 0.0000
Ruminococcaceae.Otu0064 -4.279e-03 0.010093 0.000e+00 0.0625
Parabacteroides.Otu1107 2.708e-03 0.008000 -1.723e-04 0.2500
Sutterella.Otu1997 1.796e-03 0.016227 0.000e+00 0.1875
Prevotella.Otu1563 -2.756e-03 0.005806 0.000e+00 0.0625
Bacteroidales.Otu1168 4.422e-03 0.014022 0.000e+00 0.3125
Prevotella.Otu1994 -2.480e-02 0.062211 0.000e+00 0.0625
Prevotella.Otu1319 -5.027e-03 0.013465 0.000e+00 0.0625
Alistipes.Otu0529 -6.624e-04 0.005424 0.000e+00 0.2500
Bacteroides.Otu2534 4.681e-03 0.015344 0.000e+00 0.3125
Bacteroides.Otu0480 2.560e-03 0.048919 0.000e+00 0.1250
Bifidobacterium.Otu1244 1.745e-04 0.001820 0.000e+00 0.1250
Bacteroides.Otu0786 1.593e-03 0.006752 0.000e+00 0.3125
Bacteroides.Otu1624 -1.507e-03 0.009672 0.000e+00 0.2500
Prevotella.Otu1633 1.055e-03 0.016686 0.000e+00 0.2500
Akkermansia.Otu1935 9.717e-03 0.038570 0.000e+00 0.2500
Bacteroides.Otu2065 2.156e-02 0.097704 0.000e+00 0.1250
Prevotella.Otu0773 -3.323e-03 0.010411 0.000e+00 0.0625
Ruminococcus.Otu0422 -5.529e-03 0.020378 0.000e+00 0.0000
Sutterella.Otu0171 -5.864e-03 0.026949 0.000e+00 0.1875
Prevotella.Otu2327 -2.132e-03 0.005169 0.000e+00 0.1250
Megamonas.Otu2657 -8.817e-03 0.032427 0.000e+00 0.0625
Bacteroides.Otu2216 5.557e-03 0.019794 0.000e+00 0.1250
Bacteroides.Otu1726 -1.326e-02 0.052841 0.000e+00 0.0000
Phascolarctobacterium.Otu1814 -1.921e-03 0.009288 0.000e+00 0.3125
Prevotella.Otu0882 -9.470e-05 0.004214 0.000e+00 0.1250
Prevotellaceae.Otu2503 -1.022e-03 0.009357 0.000e+00 0.1250
Ruminococcaceae.Otu1504 -5.396e-03 0.023011 0.000e+00 0.0625
Klebsiella.Otu1452 4.337e-04 0.001725 0.000e+00 0.2500
Prevotella.Otu0738 6.810e-03 0.024163 0.000e+00 0.1250
Lactobacillus.Otu0959 -1.125e-02 0.045076 0.000e+00 0.0625
Prevotella.Otu2501 2.810e-03 0.008105 0.000e+00 0.1875
Ruminococcaceae.Otu2510 -3.572e-03 0.013826 0.000e+00 0.0000
Prevotella.Otu2666 2.828e-03 0.014376 0.000e+00 0.0625
Streptococcus.Otu0749 -4.600e-03 0.018835 0.000e+00 0.1250
Catenibacterium.Otu2320 -3.051e-03 0.012894 0.000e+00 0.0625
Prevotella.Otu2702 -2.755e-03 0.011132 0.000e+00 0.0625
Prevotella.Otu2220 2.219e-03 0.008166 0.000e+00 0.1250
Bacteroides.Otu2277 -1.414e-03 0.005822 0.000e+00 0.0625
Megamonas.Otu1877 -4.600e-03 0.018400 0.000e+00 0.0000
Lactobacillales.Otu0504 9.243e-03 0.036972 0.000e+00 0.0625
Bacteroides.Otu0801 -1.572e-03 0.006287 0.000e+00 0.0000

(1.3.1.4.4.2.2.2.1.1.1) Figure 546. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/32311a7433.svg.

(1.3.1.4.4.2.2.2.1.1.1) Figure 547. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/323173d5b95.svg.

(1.3.1.4.4.2.2.2.1.1.1) Figure 548. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/32367f8bd57.svg.

(1.3.1.4.4.2.2.2.1.1.1) Figure 549. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/32379cad4d8.svg.

(1.3.1.4.4.2.2.2.1.2) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.4.4.2.2.2.1.2.1) Figure 550. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/323381f6c29.svg.

(1.3.1.4.4.2.2.2.1.2.1) Figure 551. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3232b87bc55.svg.

(1.3.1.4.4.2.2.2.1.2.1) Figure 552. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3235c7172d.svg.

(1.3.1.4.4.2.3) Grouping variables age.quant
(1.3.1.4.4.2.4) Iterating over Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order
(1.3.1.4.4.2.4.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking
(1.3.1.4.4.2.4.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.3.1.4.4.2.4.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.3.1.4.4.2.4.2.1.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.4.4.2.4.2.1.1.0) Table 136. Data table used for plots. Data grouped by age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.4.4.2.4.2.1.1.0-3234319185b.1.3.1.4.4.2.4.2.1.1.csv

.record.id age.quant feature abundance.diff
MG1 (15.3,26.4] Bacteroides.Otu0001 2.725e-03
MG10 (8.71,15.3] Bacteroides.Otu0001 4.966e-01
MG13 (15.3,26.4] Bacteroides.Otu0001 1.506e-01
MG14 (15.3,26.4] Bacteroides.Otu0001 -6.092e-03
MG16 (15.3,26.4] Bacteroides.Otu0001 1.024e-02
MG17 (15.3,26.4] Bacteroides.Otu0001 4.258e-02
MG19 (6.27,8.71] Bacteroides.Otu0001 4.416e-02
MG2 [3.18,6.27] Bacteroides.Otu0001 -2.902e-03
MG21 (8.71,15.3] Bacteroides.Otu0001 6.177e-02
MG22 (8.71,15.3] Bacteroides.Otu0001 -1.049e-01
MG23 (6.27,8.71] Bacteroides.Otu0001 9.506e-03
MG25 (8.71,15.3] Bacteroides.Otu0001 1.649e-01
MG3 (8.71,15.3] Bacteroides.Otu0001 2.066e-01
MG4 (8.71,15.3] Bacteroides.Otu0001 1.209e-01
MG6 (8.71,15.3] Bacteroides.Otu0001 -3.992e-02
MG8 (8.71,15.3] Bacteroides.Otu0001 -4.020e-02
MG1 (15.3,26.4] Bacteroides.Otu2520 1.618e-01
MG10 (8.71,15.3] Bacteroides.Otu2520 -1.173e-01
MG13 (15.3,26.4] Bacteroides.Otu2520 8.620e-03
MG14 (15.3,26.4] Bacteroides.Otu2520 -7.465e-02
MG16 (15.3,26.4] Bacteroides.Otu2520 -2.704e-02
MG17 (15.3,26.4] Bacteroides.Otu2520 -5.743e-03
MG19 (6.27,8.71] Bacteroides.Otu2520 -2.394e-01
MG2 [3.18,6.27] Bacteroides.Otu2520 -3.766e-03
MG21 (8.71,15.3] Bacteroides.Otu2520 -1.659e-02
MG22 (8.71,15.3] Bacteroides.Otu2520 7.604e-02
MG23 (6.27,8.71] Bacteroides.Otu2520 0.000e+00
MG25 (8.71,15.3] Bacteroides.Otu2520 4.436e-02
MG3 (8.71,15.3] Bacteroides.Otu2520 1.389e-01
MG4 (8.71,15.3] Bacteroides.Otu2520 -1.767e-02
MG6 (8.71,15.3] Bacteroides.Otu2520 -1.191e-02
MG8 (8.71,15.3] Bacteroides.Otu2520 7.802e-02
MG1 (15.3,26.4] Prevotella.Otu1987 -1.357e-01
MG10 (8.71,15.3] Prevotella.Otu1987 0.000e+00
MG13 (15.3,26.4] Prevotella.Otu1987 -2.194e-01
MG14 (15.3,26.4] Prevotella.Otu1987 0.000e+00
MG16 (15.3,26.4] Prevotella.Otu1987 0.000e+00
MG17 (15.3,26.4] Prevotella.Otu1987 -1.989e-01
MG19 (6.27,8.71] Prevotella.Otu1987 0.000e+00
MG2 [3.18,6.27] Prevotella.Otu1987 -7.571e-02
MG21 (8.71,15.3] Prevotella.Otu1987 9.962e-02
MG22 (8.71,15.3] Prevotella.Otu1987 0.000e+00
MG23 (6.27,8.71] Prevotella.Otu1987 0.000e+00
MG25 (8.71,15.3] Prevotella.Otu1987 -2.478e-01
MG3 (8.71,15.3] Prevotella.Otu1987 0.000e+00
MG4 (8.71,15.3] Prevotella.Otu1987 0.000e+00
MG6 (8.71,15.3] Prevotella.Otu1987 0.000e+00
MG8 (8.71,15.3] Prevotella.Otu1987 -7.326e-05
MG1 (15.3,26.4] Bacteroides.Otu2654 4.009e-01
MG10 (8.71,15.3] Bacteroides.Otu2654 7.560e-02
MG13 (15.3,26.4] Bacteroides.Otu2654 3.429e-02
MG14 (15.3,26.4] Bacteroides.Otu2654 1.614e-03
MG16 (15.3,26.4] Bacteroides.Otu2654 -4.714e-03
MG17 (15.3,26.4] Bacteroides.Otu2654 -8.516e-05
MG19 (6.27,8.71] Bacteroides.Otu2654 -1.612e-03
MG2 [3.18,6.27] Bacteroides.Otu2654 -8.290e-04
MG21 (8.71,15.3] Bacteroides.Otu2654 -7.487e-03
MG22 (8.71,15.3] Bacteroides.Otu2654 -7.327e-03
MG23 (6.27,8.71] Bacteroides.Otu2654 7.416e-04
MG25 (8.71,15.3] Bacteroides.Otu2654 4.818e-03
MG3 (8.71,15.3] Bacteroides.Otu2654 3.370e-02
MG4 (8.71,15.3] Bacteroides.Otu2654 6.595e-02
MG6 (8.71,15.3] Bacteroides.Otu2654 -2.131e-04
MG8 (8.71,15.3] Bacteroides.Otu2654 4.885e-02
MG1 (15.3,26.4] Bacteroides.Otu0863 2.447e-03
MG10 (8.71,15.3] Bacteroides.Otu0863 2.601e-02
MG13 (15.3,26.4] Bacteroides.Otu0863 2.756e-02
MG14 (15.3,26.4] Bacteroides.Otu0863 1.316e-01
MG16 (15.3,26.4] Bacteroides.Otu0863 7.900e-02
MG17 (15.3,26.4] Bacteroides.Otu0863 -8.260e-03
MG19 (6.27,8.71] Bacteroides.Otu0863 -9.401e-03
MG2 [3.18,6.27] Bacteroides.Otu0863 1.008e-02
MG21 (8.71,15.3] Bacteroides.Otu0863 -1.090e-02
MG22 (8.71,15.3] Bacteroides.Otu0863 9.431e-03
MG23 (6.27,8.71] Bacteroides.Otu0863 1.594e-02
MG25 (8.71,15.3] Bacteroides.Otu0863 2.240e-02
MG3 (8.71,15.3] Bacteroides.Otu0863 -6.552e-03
MG4 (8.71,15.3] Bacteroides.Otu0863 -6.196e-03
MG6 (8.71,15.3] Bacteroides.Otu0863 1.577e-01
MG8 (8.71,15.3] Bacteroides.Otu0863 -3.393e-03
MG1 (15.3,26.4] Bacteroides.Otu2038 3.818e-04
MG10 (8.71,15.3] Bacteroides.Otu2038 1.606e-03
MG13 (15.3,26.4] Bacteroides.Otu2038 1.551e-02
MG14 (15.3,26.4] Bacteroides.Otu2038 1.254e-01
MG16 (15.3,26.4] Bacteroides.Otu2038 -2.114e-03
MG17 (15.3,26.4] Bacteroides.Otu2038 5.059e-03
MG19 (6.27,8.71] Bacteroides.Otu2038 1.988e-03
MG2 [3.18,6.27] Bacteroides.Otu2038 3.786e-04
MG21 (8.71,15.3] Bacteroides.Otu2038 1.986e-02
MG22 (8.71,15.3] Bacteroides.Otu2038 -7.567e-03
MG23 (6.27,8.71] Bacteroides.Otu2038 1.443e-01
MG25 (8.71,15.3] Bacteroides.Otu2038 1.708e-02
MG3 (8.71,15.3] Bacteroides.Otu2038 1.866e-02
MG4 (8.71,15.3] Bacteroides.Otu2038 2.352e-03
MG6 (8.71,15.3] Bacteroides.Otu2038 -1.685e-03
MG8 (8.71,15.3] Bacteroides.Otu2038 -2.280e-02
MG1 (15.3,26.4] Faecalibacterium.Otu0067 -6.537e-02
MG10 (8.71,15.3] Faecalibacterium.Otu0067 4.198e-03
MG13 (15.3,26.4] Faecalibacterium.Otu0067 -1.560e-03
MG14 (15.3,26.4] Faecalibacterium.Otu0067 -1.430e-02
MG16 (15.3,26.4] Faecalibacterium.Otu0067 -2.018e-02
MG17 (15.3,26.4] Faecalibacterium.Otu0067 4.790e-02
MG19 (6.27,8.71] Faecalibacterium.Otu0067 5.674e-03
MG2 [3.18,6.27] Faecalibacterium.Otu0067 -3.070e-02
MG21 (8.71,15.3] Faecalibacterium.Otu0067 2.118e-02
MG22 (8.71,15.3] Faecalibacterium.Otu0067 -5.212e-03
MG23 (6.27,8.71] Faecalibacterium.Otu0067 2.208e-02
MG25 (8.71,15.3] Faecalibacterium.Otu0067 1.247e-02
MG3 (8.71,15.3] Faecalibacterium.Otu0067 -1.614e-02
MG4 (8.71,15.3] Faecalibacterium.Otu0067 -1.599e-03
MG6 (8.71,15.3] Faecalibacterium.Otu0067 -1.466e-02
MG8 (8.71,15.3] Faecalibacterium.Otu0067 -2.062e-02
MG1 (15.3,26.4] Alistipes.Otu2508 -9.160e-03
MG10 (8.71,15.3] Alistipes.Otu2508 -4.431e-02
MG13 (15.3,26.4] Alistipes.Otu2508 3.821e-02
MG14 (15.3,26.4] Alistipes.Otu2508 -2.701e-02
MG16 (15.3,26.4] Alistipes.Otu2508 1.010e-03
MG17 (15.3,26.4] Alistipes.Otu2508 -6.131e-03
MG19 (6.27,8.71] Alistipes.Otu2508 4.513e-04
MG2 [3.18,6.27] Alistipes.Otu2508 -2.342e-02
MG21 (8.71,15.3] Alistipes.Otu2508 -9.856e-02
MG22 (8.71,15.3] Alistipes.Otu2508 -5.612e-03
MG23 (6.27,8.71] Alistipes.Otu2508 0.000e+00
MG25 (8.71,15.3] Alistipes.Otu2508 6.635e-03
MG3 (8.71,15.3] Alistipes.Otu2508 3.089e-02
MG4 (8.71,15.3] Alistipes.Otu2508 0.000e+00
MG6 (8.71,15.3] Alistipes.Otu2508 1.231e-01
MG8 (8.71,15.3] Alistipes.Otu2508 0.000e+00
MG1 (15.3,26.4] Ruminococcus.Otu1859 -1.761e-04
MG10 (8.71,15.3] Ruminococcus.Otu1859 0.000e+00
MG13 (15.3,26.4] Ruminococcus.Otu1859 -1.410e-03
MG14 (15.3,26.4] Ruminococcus.Otu1859 -1.369e-01
MG16 (15.3,26.4] Ruminococcus.Otu1859 -1.641e-02
MG17 (15.3,26.4] Ruminococcus.Otu1859 0.000e+00
MG19 (6.27,8.71] Ruminococcus.Otu1859 -1.817e-01
MG2 [3.18,6.27] Ruminococcus.Otu1859 -5.924e-02
MG21 (8.71,15.3] Ruminococcus.Otu1859 -1.606e-02
MG22 (8.71,15.3] Ruminococcus.Otu1859 -3.570e-03
MG23 (6.27,8.71] Ruminococcus.Otu1859 0.000e+00
MG25 (8.71,15.3] Ruminococcus.Otu1859 -2.714e-03
MG3 (8.71,15.3] Ruminococcus.Otu1859 -9.188e-03
MG4 (8.71,15.3] Ruminococcus.Otu1859 0.000e+00
MG6 (8.71,15.3] Ruminococcus.Otu1859 -6.607e-03
MG8 (8.71,15.3] Ruminococcus.Otu1859 -1.606e-02
MG1 (15.3,26.4] Bacteroides.Otu2065 -3.875e-03
MG10 (8.71,15.3] Bacteroides.Otu2065 -3.432e-02
MG13 (15.3,26.4] Bacteroides.Otu2065 0.000e+00
MG14 (15.3,26.4] Bacteroides.Otu2065 0.000e+00
MG16 (15.3,26.4] Bacteroides.Otu2065 -3.991e-02
MG17 (15.3,26.4] Bacteroides.Otu2065 0.000e+00
MG19 (6.27,8.71] Bacteroides.Otu2065 3.769e-01
MG2 [3.18,6.27] Bacteroides.Otu2065 0.000e+00
MG21 (8.71,15.3] Bacteroides.Otu2065 -2.553e-02
MG22 (8.71,15.3] Bacteroides.Otu2065 0.000e+00
MG23 (6.27,8.71] Bacteroides.Otu2065 0.000e+00
MG25 (8.71,15.3] Bacteroides.Otu2065 0.000e+00
MG3 (8.71,15.3] Bacteroides.Otu2065 -1.316e-05
MG4 (8.71,15.3] Bacteroides.Otu2065 0.000e+00
MG6 (8.71,15.3] Bacteroides.Otu2065 0.000e+00
MG8 (8.71,15.3] Bacteroides.Otu2065 7.167e-02
MG1 (15.3,26.4] Bacteroides.Otu0848 8.741e-03
MG10 (8.71,15.3] Bacteroides.Otu0848 4.465e-02
MG13 (15.3,26.4] Bacteroides.Otu0848 5.281e-03
MG14 (15.3,26.4] Bacteroides.Otu0848 4.685e-03
MG16 (15.3,26.4] Bacteroides.Otu0848 -1.186e-02
MG17 (15.3,26.4] Bacteroides.Otu0848 -1.277e-03
MG19 (6.27,8.71] Bacteroides.Otu0848 -1.343e-03
MG2 [3.18,6.27] Bacteroides.Otu0848 1.714e-04
MG21 (8.71,15.3] Bacteroides.Otu0848 -1.575e-02
MG22 (8.71,15.3] Bacteroides.Otu0848 3.979e-03
MG23 (6.27,8.71] Bacteroides.Otu0848 1.290e-01
MG25 (8.71,15.3] Bacteroides.Otu0848 1.673e-02
MG3 (8.71,15.3] Bacteroides.Otu0848 9.533e-03
MG4 (8.71,15.3] Bacteroides.Otu0848 -4.068e-03
MG6 (8.71,15.3] Bacteroides.Otu0848 4.240e-03
MG8 (8.71,15.3] Bacteroides.Otu0848 2.679e-02
MG1 (15.3,26.4] Prevotella.Otu1994 0.000e+00
MG10 (8.71,15.3] Prevotella.Otu1994 0.000e+00
MG13 (15.3,26.4] Prevotella.Otu1994 -1.383e-01
MG14 (15.3,26.4] Prevotella.Otu1994 0.000e+00
MG16 (15.3,26.4] Prevotella.Otu1994 0.000e+00
MG17 (15.3,26.4] Prevotella.Otu1994 -3.210e-02
MG19 (6.27,8.71] Prevotella.Otu1994 0.000e+00
MG2 [3.18,6.27] Prevotella.Otu1994 -2.169e-01
MG21 (8.71,15.3] Prevotella.Otu1994 1.301e-02
MG22 (8.71,15.3] Prevotella.Otu1994 0.000e+00
MG23 (6.27,8.71] Prevotella.Otu1994 0.000e+00
MG25 (8.71,15.3] Prevotella.Otu1994 -2.240e-02
MG3 (8.71,15.3] Prevotella.Otu1994 0.000e+00
MG4 (8.71,15.3] Prevotella.Otu1994 0.000e+00
MG6 (8.71,15.3] Prevotella.Otu1994 0.000e+00
MG8 (8.71,15.3] Prevotella.Otu1994 0.000e+00
MG1 (15.3,26.4] Bacteroides.Otu2431 4.277e-03
MG10 (8.71,15.3] Bacteroides.Otu2431 -4.749e-02
MG13 (15.3,26.4] Bacteroides.Otu2431 4.128e-03
MG14 (15.3,26.4] Bacteroides.Otu2431 -6.144e-05
MG16 (15.3,26.4] Bacteroides.Otu2431 -7.173e-05
MG17 (15.3,26.4] Bacteroides.Otu2431 -1.363e-03
MG19 (6.27,8.71] Bacteroides.Otu2431 1.881e-02
MG2 [3.18,6.27] Bacteroides.Otu2431 -8.290e-04

(1.3.1.4.4.2.4.2.1.1.1) Widget 150. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.4.4.2.4.2.1.1.1-323682801f8Dynamic.Pivot.Table.html

(1.3.1.4.4.2.4.2.1.1.1) Widget 151. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.4.4.2.4.2.1.1.1-323249b4921Dynamic.Pivot.Table.html

(1.3.1.4.4.2.4.2.1.1.1) Table 137. Summary table. Data grouped by age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.4.4.2.4.2.1.1.1-32311a8dafb.1.3.1.4.4.2.4.2.1.1.csv

feature age.quant mean sd median incidence
Lachnospiracea_incertae_sedis.Otu0113 [3.18,6.27] -4.045e-03 NA -4.045e-03 0.000
Lachnospiracea_incertae_sedis.Otu0113 (6.27,8.71] -2.662e-04 0.0016531 -2.662e-04 0.500
Lachnospiracea_incertae_sedis.Otu0113 (8.71,15.3] -3.633e-03 0.0024251 -3.836e-03 0.000
Lachnospiracea_incertae_sedis.Otu0113 (15.3,26.4] -2.813e-03 0.0016016 -2.883e-03 0.000
Lachnospiraceae.Otu2512 [3.18,6.27] -1.108e-03 NA -1.108e-03 0.000
Lachnospiraceae.Otu2512 (6.27,8.71] 1.399e-04 0.0008203 1.399e-04 0.500
Lachnospiraceae.Otu2512 (8.71,15.3] -9.890e-03 0.0079083 -1.217e-02 0.125
Lachnospiraceae.Otu2512 (15.3,26.4] -7.757e-03 0.0055838 -8.577e-03 0.000
Lachnospiraceae.Otu2222 [3.18,6.27] -6.134e-03 NA -6.134e-03 0.000
Lachnospiraceae.Otu2222 (6.27,8.71] -2.002e-02 0.0283141 -2.002e-02 0.000
Lachnospiraceae.Otu2222 (8.71,15.3] -3.475e-03 0.0024144 -2.415e-03 0.000
Lachnospiraceae.Otu2222 (15.3,26.4] -2.514e-03 0.0020235 -2.446e-03 0.000
Lachnospiracea_incertae_sedis.Otu2549 [3.18,6.27] -1.666e-03 NA -1.666e-03 0.000
Lachnospiracea_incertae_sedis.Otu2549 (6.27,8.71] -1.562e-02 0.0220935 -1.562e-02 0.000
Lachnospiracea_incertae_sedis.Otu2549 (8.71,15.3] -1.410e-03 0.0008701 -1.283e-03 0.000
Lachnospiracea_incertae_sedis.Otu2549 (15.3,26.4] -1.339e-03 0.0018247 -3.525e-04 0.000
Lachnospiracea_incertae_sedis.Otu1990 [3.18,6.27] -7.668e-03 NA -7.668e-03 0.000
Lachnospiracea_incertae_sedis.Otu1990 (6.27,8.71] -3.298e-03 0.0035252 -3.298e-03 0.000
Lachnospiracea_incertae_sedis.Otu1990 (8.71,15.3] -3.298e-03 0.0024148 -3.511e-03 0.125
Lachnospiracea_incertae_sedis.Otu1990 (15.3,26.4] -1.540e-03 0.0046327 -3.171e-03 0.200
Ruminococcus.Otu1027 [3.18,6.27] -3.938e-03 NA -3.938e-03 0.000
Ruminococcus.Otu1027 (6.27,8.71] -1.981e-03 0.0028010 -1.981e-03 0.000
Ruminococcus.Otu1027 (8.71,15.3] -2.056e-03 0.0022228 -1.370e-03 0.000
Ruminococcus.Otu1027 (15.3,26.4] -1.018e-03 0.0012908 -3.096e-04 0.000
Lachnospiraceae.Otu0272 [3.18,6.27] -1.351e-03 NA -1.351e-03 0.000
Lachnospiraceae.Otu0272 (6.27,8.71] -1.232e-02 0.0174269 -1.232e-02 0.000
Lachnospiraceae.Otu0272 (8.71,15.3] -1.823e-03 0.0032316 -6.536e-04 0.000
Lachnospiraceae.Otu0272 (15.3,26.4] -9.687e-04 0.0017797 -8.814e-05 0.200
Lachnospiracea_incertae_sedis.Otu2746 [3.18,6.27] -2.902e-03 NA -2.902e-03 0.000
Lachnospiracea_incertae_sedis.Otu2746 (6.27,8.71] -8.154e-03 0.0096317 -8.154e-03 0.000
Lachnospiracea_incertae_sedis.Otu2746 (8.71,15.3] -2.443e-03 0.0024769 -1.627e-03 0.125
Lachnospiracea_incertae_sedis.Otu2746 (15.3,26.4] -1.258e-03 0.0039009 -1.761e-03 0.200
Gemmiger.Otu0907 [3.18,6.27] -8.569e-03 NA -8.569e-03 0.000
Gemmiger.Otu0907 (6.27,8.71] 0.000e+00 0.0000000 0.000e+00 0.000
Gemmiger.Otu0907 (8.71,15.3] -4.069e-03 0.0034642 -4.179e-03 0.000
Gemmiger.Otu0907 (15.3,26.4] -4.082e-03 0.0057425 -2.099e-03 0.400
Ruminococcus.Otu2545 [3.18,6.27] -1.036e-03 NA -1.036e-03 0.000
Ruminococcus.Otu2545 (6.27,8.71] -1.923e-03 0.0027197 -1.923e-03 0.000
Ruminococcus.Otu2545 (8.71,15.3] -1.019e-03 0.0009660 -9.074e-04 0.000
Ruminococcus.Otu2545 (15.3,26.4] -3.385e-03 0.0068293 -4.258e-04 0.000
Lachnospiraceae.Otu0220 [3.18,6.27] -1.076e-04 NA -1.076e-04 0.000
Lachnospiraceae.Otu0220 (6.27,8.71] -2.425e-02 0.0254398 -2.425e-02 0.000
Lachnospiraceae.Otu0220 (8.71,15.3] -1.025e-03 0.0063047 -3.039e-03 0.250
Lachnospiraceae.Otu0220 (15.3,26.4] -2.396e-03 0.0026139 -1.113e-03 0.200
Blautia.Otu2495 [3.18,6.27] -1.642e-02 NA -1.642e-02 0.000
Blautia.Otu2495 (6.27,8.71] -2.235e-03 0.0031613 -2.235e-03 0.000
Blautia.Otu2495 (8.71,15.3] -1.340e-03 0.0010015 -9.771e-04 0.000
Blautia.Otu2495 (15.3,26.4] -3.404e-04 0.0024960 3.912e-05 0.600
Bacteroides.Otu2375 [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Bacteroides.Otu2375 (6.27,8.71] 3.103e-03 0.0040011 3.103e-03 1.000
Bacteroides.Otu2375 (8.71,15.3] 1.424e-03 0.0030776 1.240e-03 0.625
Bacteroides.Otu2375 (15.3,26.4] 3.285e-03 0.0026993 3.399e-03 1.000
Ruminococcus.Otu1859 [3.18,6.27] -5.924e-02 NA -5.924e-02 0.000
Ruminococcus.Otu1859 (6.27,8.71] -9.085e-02 0.1284830 -9.085e-02 0.000
Ruminococcus.Otu1859 (8.71,15.3] -6.775e-03 0.0065121 -5.089e-03 0.000
Ruminococcus.Otu1859 (15.3,26.4] -3.097e-02 0.0595978 -1.410e-03 0.000
Roseburia.Otu2637 [3.18,6.27] 3.428e-04 NA 3.428e-04 1.000
Roseburia.Otu2637 (6.27,8.71] -6.602e-04 0.0009337 -6.602e-04 0.000
Roseburia.Otu2637 (8.71,15.3] -2.076e-03 0.0023213 -9.751e-04 0.125
Roseburia.Otu2637 (15.3,26.4] -6.724e-04 0.0020776 1.664e-04 0.600
Lachnospiraceae.Otu2612 [3.18,6.27] -7.047e-03 NA -7.047e-03 0.000
Lachnospiraceae.Otu2612 (6.27,8.71] -1.100e-03 0.0015561 -1.100e-03 0.000
Lachnospiraceae.Otu2612 (8.71,15.3] -2.478e-03 0.0032018 -1.629e-03 0.250
Lachnospiraceae.Otu2612 (15.3,26.4] -4.157e-04 0.0037673 -1.277e-03 0.400
Bacteroides.Otu1201 [3.18,6.27] 2.922e-03 NA 2.922e-03 1.000
Bacteroides.Otu1201 (6.27,8.71] -3.212e-05 0.0010942 -3.212e-05 0.500
Bacteroides.Otu1201 (8.71,15.3] 6.801e-03 0.0154925 2.528e-03 0.750
Bacteroides.Otu1201 (15.3,26.4] 1.030e-02 0.0106104 1.126e-02 0.800
Bacteroides.Otu0001 [3.18,6.27] -2.902e-03 NA -2.902e-03 0.000
Bacteroides.Otu0001 (6.27,8.71] 2.683e-02 0.0245045 2.683e-02 1.000
Bacteroides.Otu0001 (8.71,15.3] 1.082e-01 0.1910281 9.135e-02 0.625
Bacteroides.Otu0001 (15.3,26.4] 4.002e-02 0.0645150 1.024e-02 0.800
Ruminococcus.Otu1915 [3.18,6.27] -6.218e-04 NA -6.218e-04 0.000
Ruminococcus.Otu1915 (6.27,8.71] -4.026e-03 0.0056939 -4.026e-03 0.000
Ruminococcus.Otu1915 (8.71,15.3] -1.129e-03 0.0009606 -1.076e-03 0.000
Ruminococcus.Otu1915 (15.3,26.4] -3.270e-03 0.0066436 -1.761e-04 0.000
Blautia.Otu2475 [3.18,6.27] 8.715e-03 NA 8.715e-03 1.000
Blautia.Otu2475 (6.27,8.71] -4.511e-03 0.0051186 -4.511e-03 0.000
Blautia.Otu2475 (8.71,15.3] -3.920e-03 0.0030174 -3.290e-03 0.000
Blautia.Otu2475 (15.3,26.4] 2.048e-03 0.0106041 -2.598e-03 0.200
Bacteroides.Otu0863 [3.18,6.27] 1.008e-02 NA 1.008e-02 1.000
Bacteroides.Otu0863 (6.27,8.71] 3.271e-03 0.0179208 3.271e-03 0.500
Bacteroides.Otu0863 (8.71,15.3] 2.356e-02 0.0559265 3.019e-03 0.500
Bacteroides.Otu0863 (15.3,26.4] 4.647e-02 0.0583030 2.756e-02 0.800
Lachnospiracea_incertae_sedis.Otu1152 [3.18,6.27] 2.794e-05 NA 2.794e-05 1.000
Lachnospiracea_incertae_sedis.Otu1152 (6.27,8.71] -1.604e-02 0.0115472 -1.604e-02 0.000
Lachnospiracea_incertae_sedis.Otu1152 (8.71,15.3] 1.487e-04 0.0047075 -1.171e-03 0.250
Lachnospiracea_incertae_sedis.Otu1152 (15.3,26.4] -6.972e-04 0.0017013 -7.046e-04 0.400
Bacteroides.Otu2038 [3.18,6.27] 3.786e-04 NA 3.786e-04 1.000
Bacteroides.Otu2038 (6.27,8.71] 7.317e-02 0.1006647 7.317e-02 1.000
Bacteroides.Otu2038 (8.71,15.3] 3.437e-03 0.0147727 1.979e-03 0.625
Bacteroides.Otu2038 (15.3,26.4] 2.885e-02 0.0544087 5.059e-03 0.800
Lachnospiraceae.Otu0578 [3.18,6.27] -1.451e-03 NA -1.451e-03 0.000
Lachnospiraceae.Otu0578 (6.27,8.71] -6.602e-04 0.0009337 -6.602e-04 0.000
Lachnospiraceae.Otu0578 (8.71,15.3] -1.227e-03 0.0014057 -5.699e-04 0.000
Lachnospiraceae.Otu0578 (15.3,26.4] -5.474e-03 0.0072161 -1.345e-03 0.000
Blautia.Otu0591 [3.18,6.27] 4.795e-05 NA 4.795e-05 1.000
Blautia.Otu0591 (6.27,8.71] -7.488e-04 0.0008084 -7.488e-04 0.000
Blautia.Otu0591 (8.71,15.3] -4.938e-04 0.0006027 -3.186e-04 0.000
Blautia.Otu0591 (15.3,26.4] 7.881e-04 0.0030689 -3.130e-04 0.400
Bacteroides.Otu0006 [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Bacteroides.Otu0006 (6.27,8.71] 4.185e-03 0.0090630 4.185e-03 0.500
Bacteroides.Otu0006 (8.71,15.3] 5.347e-03 0.0140722 5.989e-03 0.750
Bacteroides.Otu0006 (15.3,26.4] 6.771e-03 0.0078028 3.768e-03 1.000
Lachnospiraceae.Otu0898 [3.18,6.27] 9.845e-03 NA 9.845e-03 1.000
Lachnospiraceae.Otu0898 (6.27,8.71] -6.014e-04 0.0029480 -6.014e-04 0.500
Lachnospiraceae.Otu0898 (8.71,15.3] 7.233e-04 0.0018832 2.042e-04 0.625
Lachnospiraceae.Otu0898 (15.3,26.4] 5.493e-04 0.0003018 7.285e-04 1.000
Bacteroides.Otu0848 [3.18,6.27] 1.714e-04 NA 1.714e-04 1.000
Bacteroides.Otu0848 (6.27,8.71] 6.385e-02 0.0921980 6.385e-02 0.500
Bacteroides.Otu0848 (8.71,15.3] 1.076e-02 0.0187230 6.886e-03 0.750
Bacteroides.Otu0848 (15.3,26.4] 1.113e-03 0.0081003 4.685e-03 0.600
Coprococcus.Otu0802 [3.18,6.27] -1.586e-02 NA -1.586e-02 0.000
Coprococcus.Otu0802 (6.27,8.71] -7.945e-04 0.0007438 -7.945e-04 0.000
Coprococcus.Otu0802 (8.71,15.3] -1.257e-03 0.0028804 0.000e+00 0.375
Coprococcus.Otu0802 (15.3,26.4] -5.294e-03 0.0108211 -1.415e-04 0.000
Roseburia.Otu1051 [3.18,6.27] 1.521e-02 NA 1.521e-02 1.000
Roseburia.Otu1051 (6.27,8.71] -7.299e-03 0.0095619 -7.299e-03 0.000
Roseburia.Otu1051 (8.71,15.3] -8.739e-04 0.0006798 -7.285e-04 0.125
Roseburia.Otu1051 (15.3,26.4] 6.474e-04 0.0031855 -1.497e-04 0.400
Bacteroides.Otu0069 [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Bacteroides.Otu0069 (6.27,8.71] 7.691e-04 0.0010098 7.691e-04 1.000
Bacteroides.Otu0069 (8.71,15.3] 1.624e-02 0.0258569 8.686e-03 0.750
Bacteroides.Otu0069 (15.3,26.4] 3.703e-03 0.0086049 1.782e-03 0.600
Bacteroides.Otu2460 [3.18,6.27] -2.073e-04 NA -2.073e-04 0.000
Bacteroides.Otu2460 (6.27,8.71] 1.292e-03 0.0013186 1.292e-03 1.000
Bacteroides.Otu2460 (8.71,15.3] 2.487e-03 0.0060242 1.109e-03 0.625
Bacteroides.Otu2460 (15.3,26.4] 2.321e-03 0.0045701 4.338e-04 0.800
Bacteroides.Otu2654 [3.18,6.27] -8.290e-04 NA -8.290e-04 0.000
Bacteroides.Otu2654 (6.27,8.71] -4.350e-04 0.0016639 -4.350e-04 0.500
Bacteroides.Otu2654 (8.71,15.3] 2.674e-02 0.0338081 1.926e-02 0.625
Bacteroides.Otu2654 (15.3,26.4] 8.640e-02 0.1764947 1.614e-03 0.600
Bacteroides.Otu2765 [3.18,6.27] 2.993e-03 NA 2.993e-03 1.000
Bacteroides.Otu2765 (6.27,8.71] 2.687e-02 0.0379982 2.687e-02 0.500
Bacteroides.Otu2765 (8.71,15.3] 1.037e-02 0.0173997 9.080e-03 0.625
Bacteroides.Otu2765 (15.3,26.4] -7.373e-04 0.0065608 -4.470e-04 0.400
Bacteroides.Otu2104 [3.18,6.27] 2.443e-03 NA 2.443e-03 1.000
Bacteroides.Otu2104 (6.27,8.71] 1.242e-02 0.0175644 1.242e-02 0.500
Bacteroides.Otu2104 (8.71,15.3] 3.993e-03 0.0106311 3.009e-03 0.625
Bacteroides.Otu2104 (15.3,26.4] -6.182e-05 0.0038101 4.338e-04 0.600
Oscillibacter.Otu1518 [3.18,6.27] -4.145e-04 NA -4.145e-04 0.000
Oscillibacter.Otu1518 (6.27,8.71] 0.000e+00 0.0000000 0.000e+00 0.000
Oscillibacter.Otu1518 (8.71,15.3] -3.019e-03 0.0048186 -3.124e-04 0.000
Oscillibacter.Otu1518 (15.3,26.4] -3.098e-03 0.0056431 -4.954e-04 0.200
Erysipelotrichaceae_incertae_sedis.Otu0818 [3.18,6.27] 3.759e-01 NA 3.759e-01 1.000
Erysipelotrichaceae_incertae_sedis.Otu0818 (6.27,8.71] -9.124e-04 0.0001508 -9.124e-04 0.000
Erysipelotrichaceae_incertae_sedis.Otu0818 (8.71,15.3] 1.032e-03 0.0022473 2.656e-04 0.500
Erysipelotrichaceae_incertae_sedis.Otu0818 (15.3,26.4] 7.535e-03 0.0152244 8.109e-04 0.800
Lachnospiracea_incertae_sedis.Otu0651 [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Lachnospiracea_incertae_sedis.Otu0651 (6.27,8.71] -1.103e-03 0.0009297 -1.103e-03 0.000
Lachnospiracea_incertae_sedis.Otu0651 (8.71,15.3] -6.891e-04 0.0027057 -1.721e-04 0.250
Lachnospiracea_incertae_sedis.Otu0651 (15.3,26.4] -4.674e-03 0.0096137 -2.311e-04 0.200
Faecalibacterium.Otu0751 [3.18,6.27] -2.355e-03 NA -2.355e-03 0.000
Faecalibacterium.Otu0751 (6.27,8.71] 3.042e-03 0.0037932 3.042e-03 1.000
Faecalibacterium.Otu0751 (8.71,15.3] -2.180e-03 0.0039323 -3.086e-04 0.375
Faecalibacterium.Otu0751 (15.3,26.4] -1.075e-03 0.0166094 -1.931e-03 0.200
Ruminococcus.Otu1429 [3.18,6.27] -2.902e-03 NA -2.902e-03 0.000
Ruminococcus.Otu1429 (6.27,8.71] -4.246e-03 0.0116198 -4.246e-03 0.500
Ruminococcus.Otu1429 (8.71,15.3] -9.774e-04 0.0013302 -4.805e-04 0.000
Ruminococcus.Otu1429 (15.3,26.4] -2.473e-03 0.0054273 -5.936e-04 0.200
Dorea.Otu1142 [3.18,6.27] -1.738e-03 NA -1.738e-03 0.000
Dorea.Otu1142 (6.27,8.71] -8.351e-03 0.0062410 -8.351e-03 0.000
Dorea.Otu1142 (8.71,15.3] -2.465e-03 0.0070911 -1.778e-03 0.250
Dorea.Otu1142 (15.3,26.4] 2.904e-03 0.0070784 1.756e-03 0.600
Faecalibacterium.Otu0067 [3.18,6.27] -3.070e-02 NA -3.070e-02 0.000
Faecalibacterium.Otu0067 (6.27,8.71] 1.388e-02 0.0116018 1.388e-02 1.000
Faecalibacterium.Otu0067 (8.71,15.3] -2.549e-03 0.0146390 -3.405e-03 0.375
Faecalibacterium.Otu0067 (15.3,26.4] -1.070e-02 0.0406496 -1.430e-02 0.200
Clostridium_IV.Otu1864 [3.18,6.27] -8.497e-03 NA -8.497e-03 0.000
Clostridium_IV.Otu1864 (6.27,8.71] -1.009e-02 0.0153214 -1.009e-02 0.500
Clostridium_IV.Otu1864 (8.71,15.3] -3.571e-03 0.0089848 -8.614e-05 0.125
Clostridium_IV.Otu1864 (15.3,26.4] 1.879e-03 0.0050766 -4.232e-04 0.200
Bacteroides.Otu2437 [3.18,6.27] -5.181e-03 NA -5.181e-03 0.000
Bacteroides.Otu2437 (6.27,8.71] 7.379e-03 0.0104357 7.379e-03 0.500
Bacteroides.Otu2437 (8.71,15.3] -2.025e-02 0.0331816 -5.489e-03 0.250
Bacteroides.Otu2437 (15.3,26.4] 4.639e-03 0.0114359 -7.077e-05 0.400
Bacteroides.Otu0877 [3.18,6.27] 5.472e-03 NA 5.472e-03 1.000
Bacteroides.Otu0877 (6.27,8.71] 7.006e-05 0.0019984 7.006e-05 0.500
Bacteroides.Otu0877 (8.71,15.3] 3.702e-03 0.0170611 1.173e-04 0.500
Bacteroides.Otu0877 (15.3,26.4] 1.212e-03 0.0018969 9.106e-04 0.600
Parabacteroides.Otu1378 [3.18,6.27] 7.573e-04 NA 7.573e-04 1.000
Parabacteroides.Otu1378 (6.27,8.71] -3.395e-03 0.0048010 -3.395e-03 0.000
Parabacteroides.Otu1378 (8.71,15.3] 6.961e-03 0.0120803 4.096e-03 0.625
Parabacteroides.Otu1378 (15.3,26.4] 1.318e-03 0.0052859 -4.872e-04 0.200
Ruminococcaceae.Otu2507 [3.18,6.27] 0.000e+00 NA 0.000e+00 0.000
Ruminococcaceae.Otu2507 (6.27,8.71] -2.686e-04 0.0003799 -2.686e-04 0.000
Ruminococcaceae.Otu2507 (8.71,15.3] -2.218e-04 0.0026927 -6.447e-05 0.375
Ruminococcaceae.Otu2507 (15.3,26.4] -7.349e-03 0.0138179 -9.156e-04 0.000
Clostridium_XI.Otu2681 [3.18,6.27] -2.073e-04 NA -2.073e-04 0.000
Clostridium_XI.Otu2681 (6.27,8.71] -9.635e-04 0.0006029 -9.635e-04 0.000
Clostridium_XI.Otu2681 (8.71,15.3] -2.411e-04 0.0028398 -3.747e-04 0.125
Clostridium_XI.Otu2681 (15.3,26.4] 2.003e-02 0.0456048 1.821e-04 0.600
Clostridium_XI.Otu1804 [3.18,6.27] 2.761e-02 NA 2.761e-02 1.000
Clostridium_XI.Otu1804 (6.27,8.71] -4.285e-03 0.0017678 -4.285e-03 0.000
Clostridium_XI.Otu1804 (8.71,15.3] -1.236e-03 0.0112616 -4.161e-03 0.250
Clostridium_XI.Otu1804 (15.3,26.4] 1.584e-02 0.0562752 -1.107e-03 0.400
Bacteroides.Otu1669 [3.18,6.27] -2.073e-04 NA -2.073e-04 0.000
Bacteroides.Otu1669 (6.27,8.71] -2.283e-03 0.0032288 -2.283e-03 0.000
Bacteroides.Otu1669 (8.71,15.3] -6.958e-05 0.0023201 -3.781e-04 0.375
Bacteroides.Otu1669 (15.3,26.4] -1.451e-04 0.0019463 -1.703e-04 0.400

(1.3.1.4.4.2.4.2.1.1.1) Figure 553. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/3231340e023.svg.

(1.3.1.4.4.2.4.2.1.1.1) Figure 554. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3233ec673b5.svg.

(1.3.1.4.4.2.4.2.1.1.1) Figure 555. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3236a03b775.svg.

(1.3.1.4.4.2.4.2.1.1.1) Figure 556. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323b09b076.svg.

(1.3.1.4.4.2.4.2.1.2) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.4.4.2.4.2.1.2.1) Figure 557. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3234e0cd8a9.svg.

(1.3.1.4.4.2.4.2.1.2.1) Figure 558. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3233540c4fe.svg.

(1.3.1.4.4.2.4.2.1.2.1) Figure 559. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323501de069.svg.

(1.3.1.4.4.2.4.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.3.1.4.4.2.4.2.2.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.4.4.2.4.2.2.1.1) Figure 560. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/323490b11ac.svg.

(1.3.1.4.4.2.4.2.2.1.1) Figure 561. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3231e974a20.svg.

(1.3.1.4.4.2.4.2.2.1.1) Figure 562. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323204edc50.svg.

(1.3.1.4.4.2.4.2.2.2) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.4.4.2.4.2.2.2.1) Figure 563. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/32315596bb2.svg.

(1.3.1.4.4.2.4.2.2.2.1) Figure 564. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/323ef78bb2.svg.

(1.3.1.4.4.2.4.2.2.2.1) Figure 565. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3232c1ca4c9.svg.

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